Rapid 3’-End ssDNA Labeling Kit
Rapid 3’-End ssDNA Labeling Kit
Rapid 3’-End ssDNA Labeling Kit
Cat. No. | Product Name | Quantity |
P3010 | P3011 | Dual-End ssDNA Labeling Kit/with Dye488 and BHQ1 | 5 Rxn | 10 Rxn |
P3020 | P3021 | Dual-End ssDNA Labeling Kit/with VIC and BHQ1 | 5 Rxn | 10 Rxn |
P3030 | P3031 | Dual-End ssDNA Labeling Kit/with TMR and BHQ2 | 5 Rxn | 10 Rxn |
P3040 | P3041 | Dual-End ssDNA Labeling Kit/with CY3 and BHQ2 | 5 Rxn | 10 Rxn |
P3050 | P3051 | Dual-End ssDNA Labeling Kit/with CY5 and BHQ2 | 5 Rxn | 10 Rxn |
Description
The Rapid 3′-End ssDNA Labeling Kit is designed to covalently attach a variety of fluorescent dyes, haptens, or clickable tags to the 3’ end of single‑stranded DNA (ssDNA). This kit works directly with ssDNA (20–120 nt) and forms a stable 3’‑terminal conjugate suitable for downstream molecular applications.
A standard reaction can label up to 4 nmol of ssDNA (20–120 nt) with a typical recovery of 80–95% after purification. Labeling efficiency may vary depending on sequence context and secondary structures at the 3’ end. The separation of labeled ssDNA from unreacted components is accomplished with a simple spin-column purification procedure, yielding clean and ready-to-use labeled products.
The resulting 3′-labeled ssDNA can be used in a broad range of applications, including:
Key Features
Direct 3’-end modification – Works with standard ssDNA (20–120 nt) without requiring special nucleotides.
High yield and recovery – Typical 80–95% recovery from 4 nmol input.
Multiplex compatible – Enables simultaneous 3’ labeling of mixed oligo pools in one reaction.
NGS-ready applications – Optimized for target enrichment, hybrid-capture, and probe-based assays.
Simple workflow – Efficient labeling and purification with a quick spin-column cleanup.
Applications
This kit enables a broad spectrum of applications in biological research, diagnostics, and analytical workflows. The 3’-end labeled single-stranded DNA (ssDNA) generated can be utilized for:
NGS target enrichment – 3′ tags enable capture, pull-down, or solid-phase immobilization of probe pools for hybrid-capture enrichment prior to library construction
Hybridization probes – Use in in situ hybridization, Southern/ Northern blotting, or microarrays where 3′-terminal tags provide detection without interfering with hybridization at the probe core.
Surface/antibody/drug conjugation – 3′ tags facilitate oriented coupling to functionalized surfaces, antibodies, or small-molecule carriers.
Storage Conditions
*Store all components at their specified temperatures, limit freeze/thaw cycles to no more than 10, protect from light exposure, and handle under aseptic conditions to maintain product quality and integrity.
Item | Storage* |
10X 3′-Labeling Buffer | -20°C |
10X Catalyst A | -20°C |
40X Catalyst B | -20°C |
50X Catalyst C | -20°C |
Biotin (50 mM) | -20°C |
3’-Labeling Mix A (350 U/μL) | -20°C |
3’-Labeling Mix B (40 U/μL) | -20°C |
Binding Buffer | 15-25°C |
Wash Buffer | 15-25°C |
Oligo-Purification Column | 15-25°C |






